automatic import of python-astrovascpyf42

3 files changed, 131 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..ffa8fbf 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/AstroVascPy-0.1.6.tar.gz
diff --git a/python-astrovascpy.spec b/python-astrovascpy.spec
new file mode 100644
index 0000000..1323a3a
--- /dev/null
+++ b/python-astrovascpy.spec
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+## START: Set by rpmautospec
+## (rpmautospec version 0.7.3)
+## RPMAUTOSPEC: autorelease, autochangelog
+%define autorelease(e:s:pb:n) %{?-p:0.}%{lua:
+    release_number = 2;
+    base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}"));
+    print(release_number + base_release_number - 1);
+}%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}}
+## END: Set by rpmautospec
+
+%global pypi_name AstroVascPy
+
+# Packaged is arched but has no debuginfo
+%global debug_package %{nil}
+
+Name:           python-astrovascpy
+Version:        0.1.6
+Release:        %{autorelease}
+Summary:        Simulating blood flow in vasculature
+
+%global forgeurl https://github.com/openbraininstitute/AstroVascPy
+%global tag %{version}
+%forgemeta
+
+License:        Apache-2.0
+URL:            %forgeurl
+Source:         %forgesource
+
+BuildRequires:  gcc
+BuildRequires:  python3-devel
+
+BuildRequires:  python3-mpi4py-mpich
+BuildRequires:  python3-petsc-mpich
+BuildRequires:  mpich-devel
+BuildRequires:  python3-mpi4py-openmpi
+BuildRequires:  python3-petsc-openmpi
+BuildRequires:  openmpi-devel
+
+%global _description %{expand:
+AstroVascPy is a Python library for computing the blood pressure and
+flow through the vasculature (whole cortical column). AstroVascPy
+incorporates the effect of astrocytic endfeet on the blood vessel
+radii. In particular, AstroVascPy replicates the dynamics of the radius
+of a vessel due to vasodilation.
+
+AstroVascPy uses vascpy Point Graph representation to access the
+vasculature database stored in h5 file (sonata format).
+
+vascpy standardizes the api for the vasculature datasets.
+PointVasculature (PointGraph) representation is basically a composition
+of two pandas data frames, one for node properties (x, y, z, radius,
+other...) and one for edge properties (start_node, end_node,
+other...).}
+
+%description %_description
+
+
+%package -n python3-astrovascpy
+Summary:        %{summary}
+Requires:       python3-mpi4py-runtime
+Recommends:     python3-petsc-mpich if python3-petsc-mpich
+Recommends:     python3-petsc-openmpi if python3-petsc-openmpi
+
+%description -n python3-astrovascpy %_description
+
+
+%pyproject_extras_subpkg -n python3-astrovascpy viz
+
+
+%prep
+%forgeautosetup -p1
+
+# Nothing provides `python3dist(mpi4py)` since it depends on the MPI
+# provider. We build require both flavors.
+sed -r \
+  -e '/mpi4py/ d' \
+  -i setup.py
+
+
+%generate_buildrequires
+%pyproject_buildrequires -x test,viz
+
+
+%build
+%pyproject_wheel
+
+
+%install
+%pyproject_install
+%pyproject_save_files -l astrovascpy
+
+
+%check
+export BACKEND_SOLVER_BFS=petsc
+# Test fails for unknow reasons
+k="${k-}${k+ and }not test_petsc_installation"
+%{_mpich_load}
+# Normal test run will skip MPI tests
+%pytest -v ${k+-k }"${k-}"
+# MPI tests need to be run with `-n 4` specifically
+%{py3_test_envvars} mpirun -n 4 \
+  %{python3} -m pytest -v --with-mpi tests/test_mpi.py
+%pyproject_check_import
+%{_mpich_unload}
+
+%{_openmpi_load}
+# Normal test run will skip MPI tests
+%pytest -v ${k+-k }"${k-}"
+# MPI tests need to be run with `-n 4` specifically
+%{py3_test_envvars} mpirun -n 4 \
+  %{python3} -m pytest -v --with-mpi tests/test_mpi.py
+%pyproject_check_import
+%{_openmpi_unload}
+
+%files -n python3-astrovascpy -f %{pyproject_files}
+%doc README.md AUTHORS.txt CHANGELOG.md CITATION.cff
+
+
+%changelog
+## START: Generated by rpmautospec
+* Thu Mar 20 2025 Sandro <devel@penguinpee.nl> - 0.1.6-2
+- Update URLs
+
+* Sat Nov 23 2024 Sandro <devel@penguinpee.nl> - 0.1.6-1
+- Update to 0.1.6
+
+* Fri May 24 2024 Sandro <devel@penguinpee.nl> - 0.1.5-1
+- Initial package
+## END: Generated by rpmautospec
diff --git a/sources b/sources
new file mode 100644
index 0000000..d59fd8a
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+acfcdd445eb1973da92be502bbe45f57  AstroVascPy-0.1.6.tar.gz