automatic import of R-CRAN-AlteredPQRf40

3 files changed, 56 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..151fbc6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/AlteredPQR_0.1.0.tar.gz
diff --git a/R-CRAN-AlteredPQR.spec b/R-CRAN-AlteredPQR.spec
new file mode 100644
index 0000000..a44aeb8
--- /dev/null
+++ b/R-CRAN-AlteredPQR.spec
@@ -0,0 +1,54 @@
+%global __brp_check_rpaths %{nil}
+%global __requires_exclude ^libmpi
+%global packname  AlteredPQR
+%global packver   0.1.0
+%global rlibdir   /usr/local/lib/R/library
+
+Name:             R-CRAN-%{packname}
+Version:          0.1.0
+Release:          1%{?dist}%{?buildtag}
+Summary:          Detection of Altered Protein Quantitative Relationships
+
+License:          GPL (>= 3)
+URL:              https://cran.r-project.org/package=%{packname}
+Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
+
+
+BuildRequires:    R-devel >= 3.5.0
+Requires:         R-core >= 3.5.0
+BuildArch:        noarch
+
+%description
+Inference of protein complex states from quantitative proteomics data. The
+package takes information on known stable protein interactions (i.e.
+protein components of the same complex) and assesses how protein
+quantitative ratios change between different conditions. It reports
+protein pairs for which relative protein quantities to each other have
+been significantly altered in the tested condition.
+
+%prep
+%setup -q -c -n %{packname}
+
+# fix end of executable files
+find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
+# prevent binary stripping
+[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
+  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
+[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
+  sed -i 's@-g0@@g' {} \; || true
+# don't allow local prefix in executable scripts
+find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;
+
+%build
+
+%install
+
+mkdir -p %{buildroot}%{rlibdir}
+%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -f %{buildroot}%{rlibdir}/R.css
+# remove buildroot from installed files
+find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;
+
+%files
+%{rlibdir}/%{packname}
diff --git a/sources b/sources
new file mode 100644
index 0000000..ad6a914
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+ce3874311f39b8f4bf066114ccacc732  AlteredPQR_0.1.0.tar.gz