automatic import of R-CRAN-CARME

3 files changed, 76 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..950a8a1 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/CARME_0.1.1.tar.gz
diff --git a/R-CRAN-CARME.spec b/R-CRAN-CARME.spec
new file mode 100644
index 0000000..c09aca9
--- /dev/null
+++ b/R-CRAN-CARME.spec
@@ -0,0 +1,74 @@
+%global __brp_check_rpaths %{nil}
+%global __requires_exclude ^libmpi
+%global packname  CARME
+%global packver   0.1.1
+%global rlibdir   /usr/local/lib/R/library
+
+Name:             R-CRAN-%{packname}
+Version:          0.1.1
+Release:          1%{?dist}%{?buildtag}
+Summary:          CAR-MM Modelling in Stan
+
+License:          GPL (>= 3)
+URL:              https://cran.r-project.org/package=%{packname}
+Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
+
+
+BuildRequires:    R-devel >= 3.5.0
+Requires:         R-core >= 3.5.0
+BuildRequires:    R-CRAN-RcppParallel >= 5.0.1
+BuildRequires:    R-CRAN-rstan >= 2.18.1
+BuildRequires:    R-CRAN-StanHeaders >= 2.18.0
+BuildRequires:    R-CRAN-BH >= 1.66.0
+BuildRequires:    R-CRAN-RcppEigen >= 0.3.3.3.0
+BuildRequires:    R-CRAN-Rcpp >= 0.12.0
+BuildRequires:    R-methods 
+BuildRequires:    R-CRAN-MASS 
+BuildRequires:    R-CRAN-expm 
+BuildRequires:    R-stats 
+BuildRequires:    R-CRAN-rstantools 
+BuildRequires:    R-CRAN-rstantools
+Requires:         R-CRAN-rstan >= 2.18.1
+Requires:         R-CRAN-Rcpp >= 0.12.0
+Requires:         R-methods 
+Requires:         R-CRAN-MASS 
+Requires:         R-CRAN-expm 
+Requires:         R-stats 
+Requires:         R-CRAN-rstantools 
+Requires:         R-CRAN-rstantools
+
+%description
+'Stan' based functions to estimate CAR-MM models. These models allow to
+estimate Generalised Linear Models with CAR (conditional autoregressive)
+spatial random effects for spatially and temporally misaligned data,
+provided a suitable Multiple Membership matrix. The main references are
+Gramatica, Liverani and Congdon (2023) <doi:10.1214/23-BA1370>, Petrof,
+Neyens, Nuyts, Nackaerts, Nemery and Faes (2020) <doi:10.1002/sim.8697>
+and Gramatica, Congdon and Liverani <doi:10.1111/rssc.12480>.
+
+%prep
+%setup -q -c -n %{packname}
+
+# fix end of executable files
+find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
+# prevent binary stripping
+[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
+  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
+[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
+  sed -i 's@-g0@@g' {} \; || true
+# don't allow local prefix in executable scripts
+find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;
+
+%build
+
+%install
+
+mkdir -p %{buildroot}%{rlibdir}
+%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -f %{buildroot}%{rlibdir}/R.css
+# remove buildroot from installed files
+find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;
+
+%files
+%{rlibdir}/%{packname}
diff --git a/sources b/sources
new file mode 100644
index 0000000..5eb1152
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+8e22550cca4054d660f3ffaf781253d2  CARME_0.1.1.tar.gz