automatic import of R-CRAN-drimmRf42

3 files changed, 75 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..1cdee46 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/drimmR_1.0.1.tar.gz
diff --git a/R-CRAN-drimmR.spec b/R-CRAN-drimmR.spec
new file mode 100644
index 0000000..3c04208
--- /dev/null
+++ b/R-CRAN-drimmR.spec
@@ -0,0 +1,73 @@
+%global __brp_check_rpaths %{nil}
+%global packname  drimmR
+%global packver   1.0.1
+%global rlibdir   /usr/local/lib/R/library
+
+Name:             R-CRAN-%{packname}
+Version:          1.0.1
+Release:          1%{?dist}%{?buildtag}
+Summary:          Estimation, Simulation and Reliability of Drifting Markov Models
+
+License:          GPL-3
+URL:              https://cran.r-project.org/package=%{packname}
+Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
+
+
+BuildRequires:    R-devel >= 2.10
+Requires:         R-core >= 2.10
+BuildArch:        noarch
+BuildRequires:    R-CRAN-seqinr 
+BuildRequires:    R-CRAN-ggplot2 
+BuildRequires:    R-parallel 
+BuildRequires:    R-CRAN-future 
+BuildRequires:    R-CRAN-doParallel 
+BuildRequires:    R-CRAN-foreach 
+BuildRequires:    R-CRAN-tidyverse 
+BuildRequires:    R-CRAN-dplyr 
+BuildRequires:    R-CRAN-reshape2 
+BuildRequires:    R-CRAN-Rdpack 
+Requires:         R-CRAN-seqinr 
+Requires:         R-CRAN-ggplot2 
+Requires:         R-parallel 
+Requires:         R-CRAN-future 
+Requires:         R-CRAN-doParallel 
+Requires:         R-CRAN-foreach 
+Requires:         R-CRAN-tidyverse 
+Requires:         R-CRAN-dplyr 
+Requires:         R-CRAN-reshape2 
+Requires:         R-CRAN-Rdpack 
+
+%description
+Performs the drifting Markov models (DMM) which are non-homogeneous Markov
+models designed for modeling the heterogeneities of sequences in a more
+flexible way than homogeneous Markov chains or even hidden Markov models.
+In this context, we developed an R package dedicated to the estimation,
+simulation and the exact computation of associated reliability of drifting
+Markov models. The implemented methods are described in Vergne, N. (2008),
+<doi:10.2202/1544-6115.1326> and Barbu, V.S., Vergne, N. (2019)
+<doi:10.1007/s11009-018-9682-8> .
+
+%prep
+%setup -q -c -n %{packname}
+
+# fix end of executable files
+find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
+# prevent binary stripping
+[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
+  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
+# don't allow local prefix in executable scripts
+find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;
+
+%build
+
+%install
+
+mkdir -p %{buildroot}%{rlibdir}
+%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -f %{buildroot}%{rlibdir}/R.css
+# remove buildroot from installed files
+find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;
+
+%files
+%{rlibdir}/%{packname}
diff --git a/sources b/sources
new file mode 100644
index 0000000..e4c9820
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+1b2d1adccd98e86fdf564f6b7a6e40de  drimmR_1.0.1.tar.gz