automatic import of R-CRAN-earlyRf34

3 files changed, 63 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..981fd96 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/earlyR_0.0.5.tar.gz
diff --git a/R-CRAN-earlyR.spec b/R-CRAN-earlyR.spec
new file mode 100644
index 0000000..06cc806
--- /dev/null
+++ b/R-CRAN-earlyR.spec
@@ -0,0 +1,61 @@
+%global packname  earlyR
+%global packver   0.0.5
+%global rlibdir   /usr/local/lib/R/library
+
+Name:             R-CRAN-%{packname}
+Version:          0.0.5
+Release:          1%{?dist}%{?buildtag}
+Summary:          Estimation of Transmissibility in the Early Stages of a Disease Outbreak
+
+License:          MIT + file LICENSE
+URL:              https://cran.r-project.org/package=%{packname}
+Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
+
+
+BuildRequires:    R-devel >= 3.3.0
+Requires:         R-core >= 3.3.0
+BuildArch:        noarch
+BuildRequires:    R-stats 
+BuildRequires:    R-CRAN-distcrete 
+BuildRequires:    R-CRAN-EpiEstim 
+BuildRequires:    R-CRAN-epitrix 
+BuildRequires:    R-CRAN-ggplot2 
+Requires:         R-stats 
+Requires:         R-CRAN-distcrete 
+Requires:         R-CRAN-EpiEstim 
+Requires:         R-CRAN-epitrix 
+Requires:         R-CRAN-ggplot2 
+
+%description
+Implements a simple, likelihood-based estimation of the reproduction
+number (R0) using a branching process with a Poisson likelihood. This
+model requires knowledge of the serial interval distribution, and dates of
+symptom onsets. Infectiousness is determined by weighting R0 by the
+probability mass function of the serial interval on the corresponding day.
+It is a simplified version of the model introduced by Cori et al. (2013)
+<doi:10.1093/aje/kwt133>.
+
+%prep
+%setup -q -c -n %{packname}
+
+# fix end of executable files
+find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
+# prevent binary stripping
+[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
+  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
+# don't allow local prefix in executable scripts
+find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;
+
+%build
+
+%install
+
+mkdir -p %{buildroot}%{rlibdir}
+%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -f %{buildroot}%{rlibdir}/R.css
+# remove buildroot from installed files
+find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;
+
+%files
+%{rlibdir}/%{packname}
diff --git a/sources b/sources
new file mode 100644
index 0000000..d48cb29
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+610768a5337eb09e7570a73e75d7ce86  earlyR_0.0.5.tar.gz