automatic import of R-CRAN-hal9001

3 files changed, 81 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..246ad67 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/hal9001_0.4.3.tar.gz
diff --git a/R-CRAN-hal9001.spec b/R-CRAN-hal9001.spec
new file mode 100644
index 0000000..8c7e67e
--- /dev/null
+++ b/R-CRAN-hal9001.spec
@@ -0,0 +1,79 @@
+%global __brp_check_rpaths %{nil}
+%global packname  hal9001
+%global packver   0.4.3
+%global rlibdir   /usr/local/lib/R/library
+
+Name:             R-CRAN-%{packname}
+Version:          0.4.3
+Release:          1%{?dist}%{?buildtag}
+Summary:          The Scalable Highly Adaptive Lasso
+
+License:          GPL-3
+URL:              https://cran.r-project.org/package=%{packname}
+Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
+
+
+BuildRequires:    R-devel >= 3.1.0
+Requires:         R-core >= 3.1.0
+BuildRequires:    R-CRAN-origami >= 1.0.3
+BuildRequires:    R-CRAN-Rcpp 
+BuildRequires:    R-CRAN-Matrix 
+BuildRequires:    R-stats 
+BuildRequires:    R-utils 
+BuildRequires:    R-methods 
+BuildRequires:    R-CRAN-assertthat 
+BuildRequires:    R-CRAN-glmnet 
+BuildRequires:    R-CRAN-data.table 
+BuildRequires:    R-CRAN-stringr 
+BuildRequires:    R-CRAN-RcppEigen 
+Requires:         R-CRAN-origami >= 1.0.3
+Requires:         R-CRAN-Rcpp 
+Requires:         R-CRAN-Matrix 
+Requires:         R-stats 
+Requires:         R-utils 
+Requires:         R-methods 
+Requires:         R-CRAN-assertthat 
+Requires:         R-CRAN-glmnet 
+Requires:         R-CRAN-data.table 
+Requires:         R-CRAN-stringr 
+
+%description
+A scalable implementation of the highly adaptive lasso algorithm,
+including routines for constructing sparse matrices of basis functions of
+the observed data, as well as a custom implementation of Lasso regression
+tailored to enhance efficiency when the matrix of predictors is composed
+exclusively of indicator functions. For ease of use and increased
+flexibility, the Lasso fitting routines invoke code from the 'glmnet'
+package by default. The highly adaptive lasso was first formulated and
+described by MJ van der Laan (2017) <doi:10.1515/ijb-2015-0097>, with
+practical demonstrations of its performance given by Benkeser and van der
+Laan (2016) <doi:10.1109/DSAA.2016.93>. This implementation of the highly
+adaptive lasso algorithm was described by Hejazi, Coyle, and van der Laan
+(2020) <doi:10.21105/joss.02526>.
+
+%prep
+%setup -q -c -n %{packname}
+
+# fix end of executable files
+find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
+# prevent binary stripping
+[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
+  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
+[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
+  sed -i 's@-g0@@g' {} \; || true
+# don't allow local prefix in executable scripts
+find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;
+
+%build
+
+%install
+
+mkdir -p %{buildroot}%{rlibdir}
+%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -f %{buildroot}%{rlibdir}/R.css
+# remove buildroot from installed files
+find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;
+
+%files
+%{rlibdir}/%{packname}
diff --git a/sources b/sources
new file mode 100644
index 0000000..3078f67
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+7ea1bc75e7fa4f2ab3a914329491a66e  hal9001_0.4.3.tar.gz