automatic import of R-CRAN-qPCRhelperf42

3 files changed, 67 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..5c38467 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/qPCRhelper_0.1.0.tar.gz
diff --git a/R-CRAN-qPCRhelper.spec b/R-CRAN-qPCRhelper.spec
new file mode 100644
index 0000000..4d88cd2
--- /dev/null
+++ b/R-CRAN-qPCRhelper.spec
@@ -0,0 +1,65 @@
+%global __brp_check_rpaths %{nil}
+%global __requires_exclude ^libmpi
+%global packname  qPCRhelper
+%global packver   0.1.0
+%global rlibdir   /usr/local/lib/R/library
+
+Name:             R-CRAN-%{packname}
+Version:          0.1.0
+Release:          1%{?dist}%{?buildtag}
+Summary:          qPCR Ct Values to Expression Values
+
+License:          GPL-3
+URL:              https://cran.r-project.org/package=%{packname}
+Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
+
+
+BuildRequires:    R-devel
+Requires:         R-core
+BuildArch:        noarch
+BuildRequires:    R-CRAN-ggplot2 >= 3.4.0
+BuildRequires:    R-CRAN-magrittr >= 2.0.3
+BuildRequires:    R-CRAN-dplyr >= 1.0.0
+BuildRequires:    R-CRAN-rstatix >= 0.7.2
+BuildRequires:    R-CRAN-ggpubr >= 0.5.0
+Requires:         R-CRAN-ggplot2 >= 3.4.0
+Requires:         R-CRAN-magrittr >= 2.0.3
+Requires:         R-CRAN-dplyr >= 1.0.0
+Requires:         R-CRAN-rstatix >= 0.7.2
+Requires:         R-CRAN-ggpubr >= 0.5.0
+
+%description
+Computes normalized cycle threshold (Ct) values (delta Ct) from raw
+quantitative polymerase chain reaction (qPCR) Ct values and conducts test
+of significance using t.test(). Plots expression values based from
+log2(2^(-1*delta delta Ct)) across groups per gene of interest. Methods
+for calculation of delta delta Ct and relative expression (2^(-1*delta
+delta Ct)) values are described in: Livak & Schmittgen, (2001)
+<doi:10.1006/meth.2001.1262>.
+
+%prep
+%setup -q -c -n %{packname}
+
+# fix end of executable files
+find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
+# prevent binary stripping
+[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
+  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
+[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
+  sed -i 's@-g0@@g' {} \; || true
+# don't allow local prefix in executable scripts
+find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;
+
+%build
+
+%install
+
+mkdir -p %{buildroot}%{rlibdir}
+%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -f %{buildroot}%{rlibdir}/R.css
+# remove buildroot from installed files
+find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;
+
+%files
+%{rlibdir}/%{packname}
diff --git a/sources b/sources
new file mode 100644
index 0000000..8d18c48
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+ad60a0f5960d8209c8173dbf67976e56  qPCRhelper_0.1.0.tar.gz