automatic import of R-GenomeInfoDb

3 files changed, 154 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..d1f3882 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/GenomeInfoDb_1.32.3.tar.gz
diff --git a/R-GenomeInfoDb.spec b/R-GenomeInfoDb.spec
new file mode 100644
index 0000000..7dff9c9
--- /dev/null
+++ b/R-GenomeInfoDb.spec
@@ -0,0 +1,152 @@
+%global packname  GenomeInfoDb
+
+%global __suggests_exclude ^R\\((BSgenome\\.Celegans\\.UCSC\\.ce2|BSgenome\\.Hsapiens\\.NCBI\\.GRCh38|BSgenome\\.Scerevisiae\\.UCSC\\.sacCer2|BiocStyle|GenomicFeatures|TxDb\\.Dmelanogaster\\.UCSC\\.dm3\\.ensGene)\\)
+
+Name:             R-%{packname}
+Version:          1.32.3
+Release:          5%{?dist}
+Summary:          Utilities for manipulating chromosome and other 'seqname' identifiers
+License:          Artistic 2.0
+URL:              http://www.bioconductor.org/packages/release/bioc/html/GenomeInfoDb.html
+Source0:          http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+Requires:         tex(latex)
+BuildRequires:    R-devel >= 4.0.0 R-methods R-stats4 R-stats R-utils R-BiocGenerics >= 0.37.0
+BuildRequires:    R-S4Vectors-devel >= 0.25.12 R-IRanges-devel >= 2.13.12 R-GenomeInfoDbData
+BuildRequires:    R-RCurl
+BuildArch:        noarch
+
+%description
+The Seqnames package contains data and functions that define and allow 
+translation between different chromosome sequence naming conventions (e.g., 
+"chr1" versus "1"), including a function that attempts to place sequence 
+names in their natural, rather than lexicographic, order.
+
+%prep
+%setup -c -q -n %{packname}
+
+sed -i 's/\r//' GenomeInfoDb/NEWS
+
+%build
+
+%install
+mkdir -p %{buildroot}%{_datadir}/R/library
+%{_bindir}/R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library 
+# Clean up in advance of check
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -rf $RPM_BUILD_ROOT%{_datadir}/R/library/R.css
+
+sed -i 's/\r//' %{buildroot}%{_datadir}/R/library/%{packname}/doc/Accept-organism-for-GenomeInfoDb.Rnw
+sed -i 's/\r//' %{buildroot}%{_datadir}/R/library/%{packname}/doc/GenomeInfoDb.Rnw
+
+%check
+# All sorts of missing Suggests prevents this from working.
+# %%{_bindir}/R CMD check %%{packname}
+
+%files
+%dir %{_datadir}/R/library/%{packname}
+%doc %{_datadir}/R/library/%{packname}/html
+%{_datadir}/R/library/%{packname}/DESCRIPTION
+%doc %{_datadir}/R/library/%{packname}/NEWS
+%doc %{_datadir}/R/library/%{packname}/doc/
+%{_datadir}/R/library/%{packname}/INDEX
+%{_datadir}/R/library/%{packname}/NAMESPACE
+%{_datadir}/R/library/%{packname}/Meta
+%{_datadir}/R/library/%{packname}/R
+%{_datadir}/R/library/%{packname}/extdata/
+%{_datadir}/R/library/%{packname}/help
+%{_datadir}/R/library/%{packname}/registered/
+%{_datadir}/R/library/%{packname}/unitTests/
+
+%changelog
+* Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.3-5
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
+
+* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.3-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
+
+* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 1.32.3-3
+- R-maint-sig mass rebuild
+
+* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.3-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
+
+* Sat Sep  3 2022 Tom Callaway <spot@fedoraproject.org> - 1.32.3-1
+- update to 1.32.3
+- rebuild for R 4.2.1
+
+* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.0-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
+
+* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
+
+* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
+
+* Wed Jun 16 2021 Tom Callaway <spot@fedoraproject.org> - 1.28.0-1
+- update to 1.28.0
+- Rebuilt for R 4.1.0
+
+* Wed Feb  3 2021 Tom Callaway <spot@fedoraproject.org> - 1.26.2-1
+- update to 1.26.2
+
+* Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.24.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
+
+* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.24.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
+
+* Mon Jun  8 2020 Tom Callaway <spot@fedoraproject.org> - 1.24.0-1
+- update to 1.24.0
+- rebuild for R 4
+
+* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.22.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
+
+* Thu Nov 21 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 1.22.0-2
+- Exclude Suggests for unavailable packages
+
+* Wed Nov  6 2019 Tom Callaway <spot@fedoraproject.org> - 1.22.0-1
+- update to 1.22.0
+
+* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 1.16.0-5
+- Remove explicit dependencies provided by automatic dependency generator
+
+* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.16.0-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
+
+* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.16.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
+
+* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.16.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
+
+* Thu May 17 2018 Tom Callaway <spot@fedoraproject.org> - 1.16.0-1
+- update to 1.16.0
+
+* Wed Mar 14 2018 Tom Callaway <spot@fedoraproject.org> - 1.14.0-1
+- update to 1.14.0
+
+* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
+
+* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
+
+* Tue May 30 2017 Tom Callaway <spot@fedoraproject.org> - 1.12.1-1
+- update to 1.12.1
+
+* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.4.0-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
+
+* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 1.4.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
+
+* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.4.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
+
+* Fri May 29 2015 Tom Callaway <spot@fedoraproject.org> - 1.4.0-1
+- update to 1.4.0
+
+* Mon Jun  9 2014 Tom Callaway <spot@fedoraproject.org> - 1.0.2-1
+- initial package
diff --git a/sources b/sources
new file mode 100644
index 0000000..06338d0
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+b6f91715ebd02909efb454d4612da437  GenomeInfoDb_1.32.3.tar.gz